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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12591341_12592635_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12591341 - 12592635
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTATTCTAAAGT
Flanking Amino Acid:
GRSMLETIKKGHITGLTGVM
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74
0.54
0.8
66.6
40
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
52.8
0.17
2
71.66
45.5

Associated Gene:

Gene:
GRID1
Ensembl Gene ID:
ENSAPLG00000014832
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030396
12284526 - 12689469
404944
ENSAPLT00000026998
12385126 - 12689469
304344
ENSAPLT00000015486
12385126 - 12689205
304080