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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1263468_1275339_R

Intron Information:

Intron Rank:
153506
Intron Class:
major
Intron Phase:
Intron Coordinates:
1263468 - 1275339
Intron Length:
11872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCTCCCCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.2
30.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.1
0.84
0.7
84.7
29.7
Minor 5ss
43.2
-0.8
2.9
55.3
48.9
Minor BPS
45.6
-0.2
2.1
64.51
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030061
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043085
1262355 - 1275501
13147