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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12636001_12637496_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12636001 - 12637496
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGATGC
5'SS Class:
major
3'SS Sequence:
GTTTTGTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
CTTGTTTCAAGT
Flanking Amino Acid:
GLTLKVVTVLEEPFVMVAEN
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
61.3
38.4
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
82.7
0.74
0.9
80.5
37
Minor 5ss
44.5
-0.6
2.8
56.2
43.4
Minor BPS
47.7
-0
1.9
66.64
44.9

Associated Gene:

Gene:
GRID1
Ensembl Gene ID:
ENSAPLG00000014832
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030396
12284526 - 12689469
404944
ENSAPLT00000026998
12385126 - 12689469
304344
ENSAPLT00000015486
12385126 - 12689205
304080