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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12640087_12640829_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12640087 - 12640829
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAGT
5'SS Class:
major
3'SS Sequence:
TGTTTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
AGTTCCTGAAAC
Flanking Amino Acid:
WVVYGAFVQQGGESTVNSVA
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
75.3
40.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
84.1
0.77
0.8
78.1
35.3
Minor 5ss
35.7
-1.6
3.1
51.7
44.8
Minor BPS
65.3
0.46
1.6
72.58
37.3

Associated Gene:

Gene:
GRID1
Ensembl Gene ID:
ENSAPLG00000014832
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030396
12284526 - 12689469
404944
ENSAPLT00000026998
12385126 - 12689469
304344
ENSAPLT00000015486
12385126 - 12689205
304080