About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12640969_12661299_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12640969 - 12661299
Intron Length:
20331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTGAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
ATTGCTTGAATT
Flanking Amino Acid:
LTVSRMDNPIRTFQDLSKQM
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
72
0.5
1
66.9
42.9
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
63.8
0.51
1.5
78.9
37.7

Associated Gene:

Gene:
GRID1
Ensembl Gene ID:
ENSAPLG00000014832
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030396
12284526 - 12689469
404944
ENSAPLT00000026998
12385126 - 12689469
304344
ENSAPLT00000015486
12385126 - 12689205
304080