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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12670043_12671375_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12670043 - 12671375
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCAA
5'SS Class:
major
3'SS Sequence:
CAAATTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTCATTGAATT
Flanking Amino Acid:
GSPYRDLFSQRILELQESGD
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.5
39.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.6
0.51
1
65.9
40.2
Minor 5ss
36.5
-1.5
3.1
47
48.3
Minor BPS
53.5
0.19
1.6
72.39
38.2

Associated Gene:

Gene:
GRID1
Ensembl Gene ID:
ENSAPLG00000014832
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030396
12284526 - 12689469
404944
ENSAPLT00000026998
12385126 - 12689469
304344
ENSAPLT00000015486
12385126 - 12689205
304080