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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12671617_12688776_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12671617 - 12688776
Intron Length:
17160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCCATAAC
5'SS Class:
major
3'SS Sequence:
TCTTCCTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGTGTCTGAACT
Flanking Amino Acid:
NRCHQETPKEDKEVNLEQVH
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.3
65.8
40.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
73.1
0.52
0.8
67.4
33.8
Minor 5ss
29.7
-2.3
2.8
36.8
40.3
Minor BPS
66
0.58
1.6
81.31
40.1

Associated Gene:

Gene:
GRID1
Ensembl Gene ID:
ENSAPLG00000014832
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030396
12284526 - 12689469
404944
ENSAPLT00000026998
12385126 - 12689469
304344
ENSAPLT00000015486
12385126 - 12689205
304080