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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1269923_1270153_R

Intron Information:

Intron Rank:
153502
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1269923 - 1270153
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATTTTAA
5'SS Class:
weak_major
3'SS Sequence:
TCTGGAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCTGGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.1
67.8
33
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.6
0.31
1.1
55.3
43
Minor 5ss
48.1
-0.2
2.5
61.8
43.3
Minor BPS
48.9
-0
2.2
73.72
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030061
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046067
1262179 - 1270428
8250
ENSAPLT00000028564
1263416 - 1270428
7013
ENSAPLT00000023141
1261780 - 1270428
8649