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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12786036_12802373_R

Intron Information:

Intron Rank:
136224
Intron Class:
major
Intron Phase:
Intron Coordinates:
12786036 - 12802373
Intron Length:
16338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTGGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
81.2
0.7
0.9
80.6
31.5
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
68.5
0.66
1.6
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020720
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031455
12785847 - 12826804
40958