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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12800924_12802373_R

Intron Information:

Intron Rank:
136219
Intron Class:
major
Intron Phase:
Intron Coordinates:
12800924 - 12802373
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCATTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TTTCTCTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
64.9
0.37
1
61
37.5
Major PPT
79
0.65
0.9
69.6
40.6
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
52.7
0.17
1.9
77.82
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020720
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034758
12795893 - 12805734
9842
ENSAPLT00000033520
12795893 - 12826804
30912
ENSAPLT00000026368
12795893 - 12826804
30912