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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12802479_12804704_R

Intron Information:

Intron Rank:
136237
Intron Class:
major
Intron Phase:
Intron Coordinates:
12802479 - 12804704
Intron Length:
2226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
TATTTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TATTTCTCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
64.1
38.6
Major BPS
70
0.5
1
67
39.8
Major PPT
86.7
0.83
0.7
81
30.7
Minor 5ss
36.9
-1.5
3
42.8
38.1
Minor BPS
57.7
0.24
1.9
72.46
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020720
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034758
12795893 - 12805734
9842