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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12802479_12809044_R

Intron Information:

Intron Rank:
136216
Intron Class:
major
Intron Phase:
Intron Coordinates:
12802479 - 12809044
Intron Length:
6566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TATTTCTCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
70
0.5
1
67
39.8
Major PPT
86.7
0.83
0.7
81
30.7
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
57.7
0.24
1.9
72.46
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020720
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022090
12795924 - 12809144
13221
ENSAPLT00000042128
12786309 - 12826804
40496
ENSAPLT00000039718
12788331 - 12809144
20814
ENSAPLT00000033520
12795893 - 12826804
30912
ENSAPLT00000031455
12785847 - 12826804
40958