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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12804771_12805642_R

Intron Information:

Intron Rank:
136238
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12804771 - 12805642
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTCATTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGGCCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
78.8
38.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.3
0.53
1
69
40.7
Minor 5ss
68.6
0.63
2.3
82.3
37.5
Minor BPS
74.1
0.83
1.3
82.03
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020720
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034758
12795893 - 12805734
9842