Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12805735_12809044_R

Intron Information:

Intron Rank:

136221

Intron Class:

major

Intron Phase:

Intron Coordinates:

12805735 - 12809044

Intron Length:

3310

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TGGACTTTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

ACTCTTATAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.5

1.07

0.7

84.1

30.2

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

0.38

0.9

40.1

Minor 5ss

39.6

-1.2

2.8

49.9

46.3

Minor BPS

51.8

0.13

1.5

67.91

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020720

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026368

12795893 - 12826804

30912

ENSAPLT00000046043

12795893 - 12826804

30912