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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12809171_12813627_R

Intron Information:

Intron Rank:
136222
Intron Class:
major
Intron Phase:
Intron Coordinates:
12809171 - 12813627
Intron Length:
4457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGG
5'SS Class:
major
3'SS Sequence:
CTCTTTCCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATTCTGACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
66.2
44.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
72.6
0.51
0.9
73.6
31.5
Minor 5ss
31.7
-2.1
3.1
40.2
45.5
Minor BPS
54.7
0.13
1.7
67.52
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020720
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042128
12786309 - 12826804
40496
ENSAPLT00000033520
12795893 - 12826804
30912
ENSAPLT00000031455
12785847 - 12826804
40958
ENSAPLT00000026368
12795893 - 12826804
30912
ENSAPLT00000046043
12795893 - 12826804
30912