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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12813703_12826780_R

Intron Information:

Intron Rank:
136223
Intron Class:
major
Intron Phase:
Intron Coordinates:
12813703 - 12826780
Intron Length:
13078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTACAATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81
0.7
0.9
76.5
37.2
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
53.6
0.11
2
70.68
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020720
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042128
12786309 - 12826804
40496
ENSAPLT00000033520
12795893 - 12826804
30912
ENSAPLT00000031455
12785847 - 12826804
40958
ENSAPLT00000026368
12795893 - 12826804
30912
ENSAPLT00000046043
12795893 - 12826804
30912