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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13095371_13101498_F

Intron Information:

Intron Rank:
135814
Intron Class:
major
Intron Phase:
Intron Coordinates:
13095371 - 13101498
Intron Length:
6128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAACA
5'SS Class:
major
3'SS Sequence:
TTTTAATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.9
37.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79
0.65
1
74.4
38.9
Minor 5ss
32
-2.1
3.1
41.5
44.6
Minor BPS
72.2
0.69
1.7
86.12
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023133
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039222
13094405 - 13101864
7460