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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1312455_1317494_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1312455 - 1317494
Intron Length:
5040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
GTTTCCTTACAT
Flanking Amino Acid:
NLYEELGDSTILFLLYHFQQ
Intron Amino Acid Position:
1376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
80.2
0.68
1
79.1
33.2
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
69.9
0.7
1.7
86.3
39.3

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347