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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13136207_13161853_R

Intron Information:

Intron Rank:
135555
Intron Class:
major
Intron Phase:
Intron Coordinates:
13136207 - 13161853
Intron Length:
25647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020358
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020002
13134535 - 13162649
28115