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Intron Name: Anas_platyrhynchos_platyrhynchos_6_1317606_1321286_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1317606 - 1321286

Intron Length:

3681

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

CGGCTTCCCGAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TATTTCTCCACC

Flanking Amino Acid:

AILIVMVSYRQRQAECAKTA

Intron Amino Acid Position:

1339

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

56.5

0.15

56.2

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

55.6

0.16

71.46

39.7

Associated Gene:

Gene:

PCDH15

Ensembl Gene ID:

ENSAPLG00000003312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003398

1311071 - 1609417

298347