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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13202116_13204920_R

Intron Information:

Intron Rank:
131429
Intron Class:
major
Intron Phase:
Intron Coordinates:
13202116 - 13204920
Intron Length:
2805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTCTTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
69.1
41.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.8
0.65
0.9
78.8
33.5
Minor 5ss
38.1
-1.3
2.8
46.7
41.7
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041216
13202040 - 13226607
24568