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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13206149_13208039_R

Intron Information:

Intron Rank:
131431
Intron Class:
major
Intron Phase:
Intron Coordinates:
13206149 - 13208039
Intron Length:
1891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTGAAA
U12 Branch Point Sequence:
CCTGGTTGAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
49
-0
1.5
61.7
43.1
Major PPT
79.3
0.66
0.9
73.2
37.2
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
40.5
-0.8
2
40.38
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041216
13202040 - 13226607
24568