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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13208119_13226491_R

Intron Information:

Intron Rank:
131432
Intron Class:
major
Intron Phase:
Intron Coordinates:
13208119 - 13226491
Intron Length:
18373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGAGAT
5'SS Class:
major
3'SS Sequence:
TGCTTGCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
AATAGAGTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.4
36.5
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
75.8
0.58
0.9
72.8
37.5
Minor 5ss
35
-1.7
3.6
57.2
46.9
Minor BPS
41.6
-0.6
2.4
56.11
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041216
13202040 - 13226607
24568