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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1321506_1327200_R

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1321506 - 1327200
Intron Length:
5695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTGACACTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTGGCTGTAATA
Flanking Amino Acid:
NRAIMRNELFKFLDGKLLDI
Intron Amino Acid Position:
1266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
56.7
0.15
1.1
54.5
40.2
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
50.9
0.02
2.1
66.12
41.6

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347