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Intron Name: Anas_platyrhynchos_platyrhynchos_6_1327378_1338111_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1327378 - 1338111

Intron Length:

10734

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAACAAAT

5'SS Class:

major

3'SS Sequence:

GTCTCATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

TCCGTCTCATTT

Flanking Amino Acid:

LVEQNKDQLIGILERYVQDQ

Intron Amino Acid Position:

1207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.2

71.6

40.1

Major BPS

65.7

0.39

71.3

30.3

Major PPT

80.6

0.69

0.9

77.2

Minor 5ss

40.2

-1.1

49.8

46.3

Minor BPS

45.3

-0.2

1.8

58.64

45.5

Associated Gene:

Gene:

PCDH15

Ensembl Gene ID:

ENSAPLG00000003312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003398

1311071 - 1609417

298347