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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_133723_134018_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133723 - 134018
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
ATATCTTGAATG
Flanking Amino Acid:
GGYNEKNLNMTRLDVYTAHY
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.6
39.7
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
86.4
0.82
0.6
82.4
22.2
Minor 5ss
42.5
-0.8
3.1
54.1
44.6
Minor BPS
61.7
0.23
1.5
63.58
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014635
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015283
132793 - 138481
5689