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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13457853_13458285_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13457853 - 13458285
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTTTTTCCT
5'SS Class:
weak_major
3'SS Sequence:
AAAAGGCTACAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
ATATCTCAAACA
Flanking Amino Acid:
LVSNTVLLEVIFVSTIFNYK
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.6
0.06
1.3
55
41.6
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
45.1
-0.2
1.1
32
40.3
Minor 5ss
41.8
-0.9
2.7
57.5
39.6
Minor BPS
50.8
0.02
2
67.29
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015155
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040063
13454825 - 13459591
4767