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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13519107_13534423_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13519107 - 13534423
Intron Length:
15317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
BICC1
Ensembl Gene ID:
ENSAPLG00000015162
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015842
13519060 - 13588142
69083