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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13534494_13558915_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13534494 - 13558915
Intron Length:
24422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACAA
Flanking Amino Acid:
KLKIGAKSKKDPHIKVSGKK
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.3
38.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
85.5
0.8
0.7
80.9
30.5
Minor 5ss
48.1
-0.2
2.5
67.9
42.9
Minor BPS
67.5
0.54
1.7
80.08
35.8

Associated Gene:

Gene:
BICC1
Ensembl Gene ID:
ENSAPLG00000015162
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015842
13519060 - 13588142
69083