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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13558996_13560397_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13558996 - 13560397
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTGCACTTAATA
Flanking Amino Acid:
EKIMSVLDTKSNRVTLKMDV
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
79.8
0.67
0.9
70.1
44.9
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
60.1
0.31
1.6
65.65
41

Associated Gene:

Gene:
BICC1
Ensembl Gene ID:
ENSAPLG00000015162
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015842
13519060 - 13588142
69083