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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13570276_13570641_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13570276 - 13570641
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAGA
5'SS Class:
major
3'SS Sequence:
AACTTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTAATCAGAACA
Flanking Amino Acid:
ATSLANTNATGFSAIPHLMI
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
70.1
42
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.7
0.58
1
69.3
40.8
Minor 5ss
30.1
-2.3
2.7
34.4
41.1
Minor BPS
50.5
0.01
1.8
67.1
38.4

Associated Gene:

Gene:
BICC1
Ensembl Gene ID:
ENSAPLG00000015162
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015842
13519060 - 13588142
69083