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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13572579_13573935_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13572579 - 13573935
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
CTTTGTTCCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TAATACTGACTT
Flanking Amino Acid:
LLQGTKNSHLHTTERLLSDA
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
60
41.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
69.8
0.45
1
70.5
34
Minor 5ss
45.4
-0.5
2.9
61.1
44.5
Minor BPS
48.6
-0
1.9
68.3
42.1

Associated Gene:

Gene:
BICC1
Ensembl Gene ID:
ENSAPLG00000015162
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015842
13519060 - 13588142
69083