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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13575703_13576316_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13575703 - 13576316
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GATTTACCAATT
Flanking Amino Acid:
YEQKKLLATKAMLKKPVVTE
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.1
36.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.8
0.74
0.9
80.3
37.1
Minor 5ss
38.1
-1.3
3.1
49.4
46.8
Minor BPS
44.5
-0.3
2
64.26
39.7

Associated Gene:

Gene:
BICC1
Ensembl Gene ID:
ENSAPLG00000015162
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015842
13519060 - 13588142
69083