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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13578687_13580278_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13578687 - 13580278
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAATAAT
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAA
U12 Branch Point Sequence:
TGTGACATGACT
Flanking Amino Acid:
GSPKRKQNKSAEHYLSSSNY
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
81.5
31.6
Major BPS
56.6
0.16
1.2
49.3
38
Major PPT
87.5
0.84
0.6
85
22.6
Minor 5ss
33.1
-1.9
2.7
42.8
44.1
Minor BPS
50
0.08
2
74.33
42.1

Associated Gene:

Gene:
BICC1
Ensembl Gene ID:
ENSAPLG00000015162
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015842
13519060 - 13588142
69083