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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13580440_13581878_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13580440 - 13581878
Intron Length:
1439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTATCACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
KYTDVFQQQEIDLQTFLTLT
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
72.4
0.5
0.9
63.7
38
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
BICC1
Ensembl Gene ID:
ENSAPLG00000015162
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015842
13519060 - 13588142
69083