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Intron Name: Anas_platyrhynchos_platyrhynchos_6_1361716_1371718_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1361716 - 1371718

Intron Length:

10003

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTGCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATGCAT

U12 Branch Point Sequence:

TTTTCTTTCCCT

Flanking Amino Acid:

VRSNLRVPSKSNTARVFIEV

Intron Amino Acid Position:

1121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.2

27.2

Major BPS

67.2

0.43

1.4

77.7

37.1

Major PPT

75.1

0.57

0.8

73.3

31.6

Minor 5ss

44.5

-0.6

2.8

38.4

Minor BPS

47.8

-0

3.6

87.23

Associated Gene:

Gene:

PCDH15

Ensembl Gene ID:

ENSAPLG00000003312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003398

1311071 - 1609417

298347