Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_136885_137962_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

136885 - 137962

Intron Length:

1078

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTTCA

5'SS Class:

major

3'SS Sequence:

TTTGTTTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

GGTTTTCCACCT

Flanking Amino Acid:

GANPETIMNISQMICYKGYP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

72.4

32.9

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

88.9

0.88

0.7

88.2

29.1

Minor 5ss

43.1

-0.8

2.8

56.6

41.9

Minor BPS

43.1

-0.4

61.96

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014635

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015283

132793 - 138481

5689