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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13713146_13714141_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13713146 - 13714141
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CCCTCTTATACT
Flanking Amino Acid:
WSEIIEFCTADYSKVHLTQL
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
47.8
-0
2
62.8
47.7

Associated Gene:

Gene:
PHYHIPL
Ensembl Gene ID:
ENSAPLG00000015409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016064
13687111 - 13718357
31247