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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13714260_13717822_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13714260 - 13717822
Intron Length:
3563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTCATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGTTACACAATA
Flanking Amino Acid:
NQHKEYFDYTREHHGNALQP
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.7
0.67
0.8
74.5
34.9
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
48.9
-0
2
66.96
39

Associated Gene:

Gene:
PHYHIPL
Ensembl Gene ID:
ENSAPLG00000015409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016064
13687111 - 13718357
31247