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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1371860_1373038_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1371860 - 1373038
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTTGCTGGATT
Flanking Amino Acid:
VYSIVSGNEEDVFAINNRTG
Intron Amino Acid Position:
1074

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
70.9
0.47
1
66
44.2
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
60.2
0.4
2
83.71
37.6

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347