Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13723039_13724224_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

13723039 - 13724224

Intron Length:

1186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTTTG

5'SS Class:

major

3'SS Sequence:

AATATTTTACAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

AATTTGATAATA

Flanking Amino Acid:

LATPSLITTIQEEEDSDEDH

Intron Amino Acid Position:

706

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.1

73.5

37.9

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

59.7

0.22

1.2

58.2

45.6

Minor 5ss

46.4

-0.4

2.8

64.2

41.3

Minor BPS

47.5

-0.1

2.2

63.4

36.9

Associated Gene:

Gene:

FAM13C

Ensembl Gene ID:

ENSAPLG00000015441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020997

13720703 - 13767302

46600

ENSAPLT00000016141

13720703 - 13770149

49447

ENSAPLT00000008352

13720703 - 13841812

121110