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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13724321_13733016_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13724321 - 13733016
Intron Length:
8696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAGC
5'SS Class:
major
3'SS Sequence:
GATTTCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTATGATT
Flanking Amino Acid:
QHFNIPETIKVTKQEKSLMK
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.8
0.51
0.8
70.6
35.8
Minor 5ss
42.2
-0.9
2.5
55
42.2
Minor BPS
53.2
0.18
1.6
75.8
34.9

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020997
13720703 - 13767302
46600
ENSAPLT00000016141
13720703 - 13770149
49447
ENSAPLT00000008352
13720703 - 13841812
121110