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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1373149_1385723_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1373149 - 1385723
Intron Length:
12575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATAAC
U12 Branch Point Sequence:
ATAACCCAAATA
Flanking Amino Acid:
VIPRFTQDEYRPPPVSESAP
Intron Amino Acid Position:
1037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
53.9
0.1
1.2
55.8
37.4
Major PPT
88.4
0.86
0.6
84.2
23.7
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
47.2
-0.2
2
60.37
39.4

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347