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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13733229_13734958_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13733229 - 13734958
Intron Length:
1730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAT
5'SS Class:
major
3'SS Sequence:
ATTTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ACCTATTTACTT
Flanking Amino Acid:
DLAKGRKQLKELKLRMSEEQ
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.5
33.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
82.1
0.72
0.8
78.2
35.6
Minor 5ss
35.7
-1.6
3.1
50.7
45.8
Minor BPS
48.5
-0
1.8
62.25
42.8

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020997
13720703 - 13767302
46600
ENSAPLT00000016141
13720703 - 13770149
49447
ENSAPLT00000008352
13720703 - 13841812
121110