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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13736613_13737513_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13736613 - 13737513
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
TCGGCTTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
GTTCTTTTATCA
Flanking Amino Acid:
PSPPSAQPFMTPRSSSRCNC
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.3
76.9
33.7
Major BPS
79
0.72
1
80.3
31.7
Major PPT
74.9
0.56
0.9
72.3
37.7
Minor 5ss
34.2
-1.8
2.9
39.7
39.2
Minor BPS
58.5
0.26
1.6
68.98
37.4

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008352
13720703 - 13841812
121110
ENSAPLT00000020997
13720703 - 13767302
46600
ENSAPLT00000016141
13720703 - 13770149
49447