About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13748245_13756635_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13748245 - 13756635
Intron Length:
8391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTTGTTTTATTT
Flanking Amino Acid:
CQEEVVRFQPSLDQKAYISQ
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
88.7
0.87
0.7
85.2
29.2
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
52.9
0.17
1.7
70.13
42.3

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020997
13720703 - 13767302
46600
ENSAPLT00000016141
13720703 - 13770149
49447
ENSAPLT00000008352
13720703 - 13841812
121110