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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13764045_13765314_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13764045 - 13765314
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
HEDQVASCSARDDDNKENYL
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
89.7
0.89
0.7
84.2
30.9
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020997
13720703 - 13767302
46600
ENSAPLT00000016141
13720703 - 13770149
49447
ENSAPLT00000008352
13720703 - 13841812
121110