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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13765372_13766171_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13765372 - 13766171
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
ATCTATTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTCTATCT
Flanking Amino Acid:
SAPGLLSACALCDRNSDSVH
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.4
0.46
1.1
67.9
41.8
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
53.8
0.2
1.9
77.26
39.3

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020997
13720703 - 13767302
46600