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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13765372_13770087_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13765372 - 13770087
Intron Length:
4716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
ATCTATTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTCTATCT
Flanking Amino Acid:
DNSFNTTALAECDRNSDSVH
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.3
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.4
0.46
1.1
67.9
41.8
Minor 5ss
33.3
-1.9
3.2
36.5
41.7
Minor BPS
53.8
0.2
1.9
77.26
39.3

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016141
13720703 - 13770149
49447