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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_13765372_13809627_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13765372 - 13809627
Intron Length:
44256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTATTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTCTATCT
Flanking Amino Acid:
DEERDRSALLRCDRNSDSVH
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.4
0.46
1.1
67.9
41.8
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
53.8
0.2
1.9
77.26
39.3

Associated Gene:

Gene:
FAM13C
Ensembl Gene ID:
ENSAPLG00000015441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008352
13720703 - 13841812
121110